Christina Schmidt

The paper introduces MetaProViz, an R package for metabolomics data analysis that integrates prior knowledge to generate mechanistic hypotheses, using kidney cancer data to demonstrate its capabilities.

OmniPath Metabo integrates metabolomics data with prior knowledge to enable mechanistic analysis of the metabolome through harmonized databases and network construction.

The paper provides a guide for analyzing metabolomics data in R, integrating it with proteomics using multi-omics factor analysis and network-based approaches to discover biomarkers and understand disease mechanisms.

OmniPath integrates molecular knowledge from 168 resources to support multi-omics analysis, offering curated data, predictions, and tools for causal modeling across bulk, single-cell, and spatial data.

MetalinksDB provides a comprehensive database of metabolite-protein interactions, enabling context-specific analysis of metabolite-mediated cell-cell communication.