Author

Ana Barroso Abecasis

Universidade Nova de LisboaORCID 0000-0002-3903-5265Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:clustering· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Kristof TheysiD· 3 shared Pieter LibiniD· 3 shared Marta PingarilhoiD· 2 shared Andrea-Clemencia Pineda-PeñaiD· 1 shared Bram VranckeniD· 1 shared Guangdi LiiD· 1 shared Hanna Nebenzahl-Guimaraes· 1 shared Koen DeforcheiD· 1 shared

Activity by Year

2018-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersMolecular Biology

Kristof TheysORCID

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Author profile →

3 papers

Recent·Most cited

Drivers of HIV-1 transmission: the Portuguese case

Andrea-Clemencia Pineda-Peña, Marta Pingarilho, Guangdi Li, Bram Vrancken, Pieter Libin, Perpétua Gómes, Ricardo Jorge Camacho, Kristof Theys, Ana Barroso Abecasis, on behalf of the Portuguese HIV-1 Resistance Study Group

The paper analyzes HIV-1 subtypes B and G in Portugal, finding subtype B associated with young males and active transmission clusters, while subtype G prevalence is decreasing.

PLoS ONE · Sep 30, 2019Peer-reviewedMolecular Biology

An updated genotype classification system for Zika viruses

Hanna Nebenzahl-Guimaraes, Pieter Libin, Victor Pimentel, Marta Pingarilho, Kristof Theys, Ana Barroso Abecasis

The paper updates the Zika virus genotype classification by analyzing 414 genomes and identifying three main clades with further sub-clades, using maximum likelihood trees.

bioRxiv · Sep 11, 2019 · PreprintGenomics

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Pieter Libin, Koen Deforche, Ana Barroso Abecasis, Kristof Theys

VIRULIGN provides fast codon-correct alignment and standardized annotation for viral genome datasets.

Bioinformatics · Oct 5, 2018Peer-reviewedBioinformatics