Author

Koen Deforche

Emweb (Belgium)ORCID 0000-0003-3898-9494Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Kristof TheysiD· 2 shared Pieter LibiniD· 2 shared Abbas JarianiiD· 1 shared Alexei J. DrummondiD· 1 shared Ana Barroso AbecasisiD· 1 shared Andrew RambautiD· 1 shared Christopher Warth· 1 shared Frederick A. Matsen IViD· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Kristof TheysORCID

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4 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedFeb 25, 2020

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

Sara Cleemput, Wim Dumon, Vagner Fonseca…·Túlio de Oliveira

The paper introduces a web-based tool for rapid identification and characterization of novel coronavirus genomes from sequencing data.

164 citationstop 3%

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsVirus EvolutionPeer-reviewedJan 1, 2019

SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination

Abbas Jariani, Christopher Warth, Koen Deforche…·Kristof Theys

SANTA-SIM simulates viral sequence evolution incorporating selection, recombination, and mutation to test inference methods.

34 citations

virussimulation

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BioinformaticsBioinformaticsPeer-reviewedOct 5, 2018

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Pieter Libin, Koen Deforche, Ana Barroso Abecasis, Kristof Theys

VIRULIGN provides fast codon-correct alignment and standardized annotation for viral genome datasets.

63 citations

whole-genome sequencingexperimental assay

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BioinformaticsbioRxivPreprintOct 11, 2017

An alignment method for nucleic acid sequences against annotated genomes

The paper introduces a nucleic acid sequence alignment method that works for both similar and divergent sequences, using a genome alignment score and dynamic programming.

25 citations

DNA methylationwhole-genome sequencing

𝕏 PostBluesky