Author

Luke Thompson

National Oceanic and Atmospheric AdministrationORCID 0000-0002-3911-1280Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Approach:statistical model· 3 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Sean R. AndersoniD· 2 shared Alexander ShlemoviD· 1 shared Alexey A. GurevichiD· 1 shared Alla MikheenkoiD· 1 shared Anton KorobeynikoviD· 1 shared Astrid SchnetzeriD· 1 shared Beth A. StaufferiD· 1 shared C. Benjamin NamaniD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

Sean R. AndersonORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJul 30, 2024

Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding

Sean R. Anderson, Katherine Silliman, Leticia Barbero…·Luke R. Thompson

DOI 10.1101/2024.07.30.605667

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedJan 1, 2022

Tourmaline: a containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake

Luke Thompson, Sean R. Anderson, Paul A. Den Uyl…·Kelly D. Goodwin

Tourmaline automates amplicon sequence analysis using QIIME 2 and Snakemake, enabling rapid and reproducible processing of environmental and biomedical data.

21 citations

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 3, 2017

MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

Hosein Mohimani, Alexey A. Gurevich, Kelsey L. Alexander…·Pavel A. Pevzner

MetaRiPPquest identifies RiPPs by combining genome/metagenome mining with mass spectrometry analysis, discovering 5 novel natural products from 6 datasets.

4 citations

metagenomicsstatistical model

𝕏 PostBluesky