Author

Alexander Shlemov

St Petersburg UniversityORCID 0000-0002-2317-8587Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Organism:Drosophila· 1 Research Focus:genome assembly· 1 Assay:imaging· 1 Assay:metagenomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Anton KorobeynikoviD· 2 shared Alexander V. SpiroviD· 1 shared Alexey A. GurevichiD· 1 shared Alla MikheenkoiD· 1 shared C. Benjamin NamaniD· 1 shared David M. HollowayiD· 1 shared Evgenia GlukhoviD· 1 shared Fernando VargasiD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Anton KorobeynikovORCID

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3 papers

Recent·Most cited

Quantification reveals early dynamics in Drosophila maternal gradients

Alexander Shlemov, Theodore Alexandrov, Голяндина Нина Эдуардовна, David M. Holloway, Stefan Baumgartner, Alexander V. Spirov

The paper quantifies the early dynamics of bcd mRNA and Staufen protein in Drosophila embryos, revealing coordinated redistribution patterns and key developmental stages.

PLoS ONE · Aug 19, 2021Peer-reviewedSystems Biology

PathRacer: racing profile HMM paths on assembly graph

Alexander Shlemov, Anton Korobeynikov

PathRacer aligns profile HMMs directly to assembly graphs to recover sequences of interest from fragmented metagenome assemblies.

Lecture notes in computer science · Jan 1, 2019Peer-reviewedBioinformatics

MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

Hosein Mohimani, Alexey A. Gurevich, Kelsey L. Alexander, C. Benjamin Naman, Tiago Leão, Evgenia Glukhov, Nathan A. Moss, Tal Luzzatto‐Knaan, Fernando Vargas, Louis-Félix Nothias-Scaglia, Nitin Kumar Singh, Jon G. Sanders, Rodolfo Antonio Salido Benítez, Luke Thompson, Md-Nafiz Hamid, , Pavel A. Pevzner

MetaRiPPquest identifies RiPPs by combining genome/metagenome mining with mass spectrometry analysis, discovering 5 novel natural products from 6 datasets.

bioRxiv · Dec 3, 2017 · PreprintBioinformatics