Serap Gonen

This study evaluates how different reference populations affect SNP imputation and genomic prediction accuracy in Atlantic salmon using low-density SNP panels.

The paper introduces a method to phase and impute genotypes of missing parents in bi-parental plant populations, achieving high accuracy for both parents and their descendants.

AlphaFamSeq is a family-based phasing algorithm that minimizes errors and maximizes allele phasing, achieving high accuracy in simulated data.

This paper introduces AlphaPlantImpute, a heuristic method for phasing and imputing SNP data in bi-parental plant populations, showing better accuracy and efficiency than existing software.

This paper introduces AlphaSeqOpt, a method that allocates low-coverage sequencing resources by targeting haplotypes to improve phasing and imputation accuracy.