mgikit: Demultiplexing toolkit for MGI fastq files
mgikit is a toolkit for demultiplexing MGI fastq files and reformating them efficiently.
Bioinformatics · Sep 1, 2024Peer-reviewedBioinformatics
Author
Ziad Al Bkhetan
The University of MelbourneORCID 0000-0002-4032-5331Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2020-2024 · peak 2/yrCo-Author Collaboration Network
8 top collaborators · 10 mutual co-author linksFocal author (center)Selected co-authorORCID co-authorUnlinked name
Curved chords = mutual co-authorship4 papers
Recent·Most cited
pipesnake : Generalized software for the assembly and analysis of phylogenomic datasets from conserved genomic loci
Ian G. Brennan, Sonal Singhal, Ziad Al Bkhetan
pipesnake is a phylogenomics pipeline for processing and analyzing genomic data from short-read sequences, enabling automated and reproducible phylogenetic analysis.
Bioinformatics · Apr 8, 2024Peer-reviewedBioinformatics
A novel haplotype-based eQTL approach identifies genetic associations not detected through conventional SNP-based methods
Ziad Al Bkhetan, Gursharan Chana, Cheng Soon Ong, Benjamin Goudey, Kotagiri Ramamohanarao
The paper introduces eQTLHap, a haplotype-based eQTL method that detects genetic associations missed by SNP-based approaches, finding 22 replicated associations in real datasets.
Briefings in Bioinformatics · Mar 3, 2021Peer-reviewedBioinformatics
Evaluation of consensus strategies for haplotype phasing
Ziad Al Bkhetan, Gursharan Chana, Kotagiri Ramamohanarao, Karin M. Verspoor, Benjamin Goudey
This study evaluates consensus strategies for haplotype phasing, finding that combining multiple phasing tools reduces switch error and improves accuracy across populations and datasets.
Briefings in Bioinformatics · Oct 10, 2020Peer-reviewedBioinformatics