Author

Manish Kumar Pandey

International Crops Research Institute for the Semi-Arid TropicsORCID 0000-0002-4101-6530Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 5 Plant Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 7 Assay:whole-genome sequencing· 5 Organism:plant (other)· 4 Research Focus:gene regulatory network inference· 3 Organism:Arabidopsis· 2 Research Focus:GWAS / association mapping· 2 Research Focus:variant calling· 2 Research Focus:database / resource· 1

Frequent Co-Authors

Sunil S. GangurdeiD· 7 shared Namita DubeiD· 5 shared D. Khaja MohinuddiniD· 3 shared Pasupuleti JanilaiD· 3 shared Prakash Irappa GangashettyiD· 3 shared Priya ShahiD· 3 shared Rajeev Kumar VarshneyiD· 3 shared Ramachandran SenthiliD· 3 shared

Activity by Year

2025-2026 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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Focal author (center)Selected co-authorORCID co-authorUnlinked name

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7 shared papersGenomics

Sunil S. GangurdeORCID

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Author profile →

7 papers

Recent·Most cited

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

U. Nikhil Sagar, Sejal K. Parmar, Sunil S. Gangurde, Vinay Kumar Sharma, Arun K. Pandey, D. Khaja Mohinuddin, Namita Dube, Ramesh Bhat, K. John, Muga D. Sreevalli, P. Sandhya Rani, Kuldeep Singh, Rajeev Kumar Varshney, Manish Kumar Pandey

This study uses whole genome sequencing and GWAS to identify genetic markers associated with kernel iron, zinc, and protein content in groundnut, aiding in breeding for improved nutritional traits.

Scientific Reports · Jun 13, 2026Peer-reviewedPlant Biology

Mapping Fusarium Wilt and Sterility Mosaic Disease Resistance-Associated Genomic Regions and Haplotype Variants in Pigeonpea

Sagar Krushnaji Rangari, Suma Krishnappa, Mamta Sharma, Vinay Kumar Sharma, Hirenallur Chandappa Lohithaswa, Namita Dube, Sunil S. Gangurde, Vinay Sharma, Ragavendran Abbai, Naresh Bomma, Shruthi H. Belliappa, Karma L. Bhutia, Mahendar Thudi, Prakash Irappa Gangashetty, Manish Kumar Pandey

This study identifies genomic regions and haplotypes associated with resistance to fusarium wilt and sterility mosaic disease in pigeonpea using GWAS and KASP validation.

BMC Plant Biology · Apr 24, 2026Peer-reviewedGenomics

Identification of High Blanchability Donors, Candidate genes and Markers in Groundnut

Priya Shah, Sunil S. Gangurde, Ramachandran Senthil, Prashant Singam, Ovais Hamid Peerzada, Pasupuleti Janila, Kuldeep Singh, Sean Mayes, Manish Kumar Pandey

This study identifies high blanchability donors, candidate genes, and molecular markers in groundnut using GWAS and SNP validation.

BMC Plant Biology · Oct 21, 2025Peer-reviewedGenomics

Dissecting genomic regions and candidate genes for pod borer resistance and component traits in pigeonpea minicore collection

Abhinav Moghiya, Rajendra Sudhakar Munghate, Vinay Sharma, Suraj Prashad Mishra, Jagdish Jaba, Shailendra Singh Gaurav, Sunil S. Gangurde, Namita Dube, Sagar Krushnaji Rangari, Rajib Roychowdhury, Prakash Irappa Gangashetty, Hari Chand Sharma, Manish Kumar Pandey

This study identifies significant marker-trait associations and candidate genes for pod borer resistance and related traits in pigeonpea using GWAS and field evaluations.

Frontiers in Plant Science · Aug 29, 2025Peer-reviewedPlant Biology

InDels in an intronic region of gene Ccsmd04 coding for dormancy/auxin-associated protein controls sterility mosaic disease resistance in pigeonpea

Sagar Krushnaji Rangari, Namita Dube, Vinay Kumar Sharma, Sunil S. Gangurde, Mamta Sharma, Prakash Irappa Gangashetty, Rachit Kumar Saxena, Abhinav Moghiya, Karma L. Bhutia, Ravi Kant, Mahendar Thudi, S. J. Satheesh Naik, Aditya Pratap, GIRISH PRASAD DIXIT, Sean Mayes, Manish Kumar Pandey

The paper identifies InDels in the Ccsmd04 gene associated with sterility mosaic disease resistance in pigeonpea using QTL-seq and validates them as diagnostic markers.

International Journal of Biological Macromolecules · Jul 15, 2025Peer-reviewedGenomics

Genomic analysis uncovers unique haplotype signatures from subspecies and agronomic types associated with blanchability in groundnut

Priya Shah, Sunil S. Gangurde, Ragavendran Abbai, Ramachandran Senthil, D. Khaja Mohinuddin, Madhvi Sharma, Prashant Singam, Kuldeep Singh, Pasupuleti Janila, Chuanzhi Zhao, S. K. Bera, Mei Yuan, Xingjun Wang, Rajeev Kumar Varshney, Manish Kumar Pandey

This study identifies haplotype signatures associated with blanchability in groundnut using GWAS and haplo-pheno analysis, revealing subspecies and agronomic type associations.

bioRxiv · Jun 21, 2025 · PreprintGenomics

Genomic analysis reveals the interplay between ABA-GA in determining dormancy duration in groundnut

D. Khaja Mohinuddin, Sunil S. Gangurde, Hasan Khan, Deekshitha Bomireddy, Vinay Sharma, Priya Shah, U. Nikhil Sagar, Namita Dube, Ramachandran Senthil, B. V. Tembhurne, V. Hanumanth Nayak, A Amaregouda, Kisan Babu, K. S. Singh, Pasupuleti Janila, , Manish Kumar Pandey

The paper identifies genomic markers associated with seed dormancy in groundnut and develops SNP markers for breeding improved cultivars with controlled dormancy periods.

bioRxiv · Jun 20, 2025 · PreprintGenomics