Amanda Birmingham

This paper introduces LRQ, a long-read metagenomics method that enables absolute strain abundance measurement and resolves microbial evolution in a Crohn's disease patient over eight years.

This study shows that FXR deficiency prevents IHC-induced atherosclerosis by disrupting microbiome-bile acid signaling in ApoE-/- mice.

The paper analyzes gut microbiome data from three countries to show diet-microbiota associations vary by location and strain.

The paper identifies genes controlling limb skeletal proportion differences between mouse and jerboa by comparing transcriptomes of growth cartilages and finding species-specific expression patterns.