SNP calling parameters have minimal impact on population structure and divergence time estimates for the rice blast fungus
Sergio M. Latorre, Thorsten Langner, Angus Malmgren, Joe Win, Sophien Kamoun, Hernán A. Burbano
This study evaluates how SNP calling parameters affect population genetic analyses in the rice blast fungus, finding minimal impact on key evolutionary inferences despite variations in SNP counts.
bioRxiv · Mar 6, 2022 · PreprintGenomics