Runpeng Luo

The paper uses long-read genomics to study dikaryotic fungus genome biology, revealing nuclear-specific evolution and allele-specific expression.

The paper develops a yeast biosensor to optimize protein secretion by screening combinations of promoters, signal peptides, and terminators.

VStrains reconstructs viral strains de novo from quasispecies by extracting strain-specific paths from assembly graphs, outperforming existing methods on simulated and real datasets.