Author

Stefanie Speidel

German Cancer Research CenterORCID 0000-0002-4590-1908Unclaimed ORCID profile · follow to get notified of new preprints

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Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:trajectory inference· 1

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Hattie ChungiD· 1 shared Louis BoucherieiD· 1 shared Melanie WeberiD· 1 shared Nithya BhaskeriD· 1 shared Vladislav KimiD· 1 shared

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2025-2025 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Hattie ChungORCID

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1 paper

Recent·Most cited

Contrastive Poincare Maps: uncovering developmental lineages from single-cell data with scalable hyperbolic embeddings

Nithya Bhasker, Hattie Chung, Louis Boucherie, Vladislav Kim, Stefanie Speidel, Melanie Weber

This paper introduces Contrastive Poincare Maps (CPM) for embedding developmental scRNA-seq data in hyperbolic space, achieving better hierarchy preservation and scalability than existing methods.

bioRxiv · Aug 22, 2025 · PreprintBioinformatics