Author

Qi Xu

The University of Texas at AustinORCID 0000-0002-4646-6936Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Qi Xu3 papers · Agricultural Genomics Institute at Shenzhen

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Jeanne KowalskiiD· 3 shared Maya YlaganiD· 2 shared Brian T. LukeiD· 1 shared Imee Marie A. del MundoiD· 1 shared Karen M. VásqueziD· 1 shared Maha Zewail‐FooteiD· 1 shared

Activity by Year

2024-2024 · peak 3/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

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3 shared papersBioinformatics

Jeanne KowalskiORCID

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Author profile →

3 papers

Recent·Most cited

TTSBBC: Triplex Target Site Biomarkers and Barcodes in Cancer

Maya Ylagan, Qi Xu, Jeanne Kowalski

The paper introduces TTSBBC, a platform for analyzing and visualizing TFO target site sequences to aid in designing and validating TTSs.

Nucleic Acids Research · Apr 10, 2024Peer-reviewedBioinformatics

Frequently Together, Among Model Systems Molecular Alterations: Cancer Maintenance Markers with Translational Study Design

Maya Ylagan, Qi Xu, Jeanne Kowalski

The paper introduces methods to identify molecular alterations that frequently co-occur across cancer models, aiming to discover cancer maintenance markers and inform translational study design.

bioRxiv · Jan 26, 2024 · PreprintBioinformatics

MoCoLo: a testing framework for motif co-localization

Qi Xu, Imee Marie A. del Mundo, Maha Zewail‐Foote, Brian T. Luke, Karen M. Vásquez, Jeanne Kowalski

MoCoLo tests motif co-localization by analyzing reciprocal co-occurrence and accounting for confounders, confirming histone marker co-occurrence and oxidative DNA damage localization.

Briefings in Bioinformatics · Jan 17, 2024Peer-reviewedBioinformatics