Paul Richmond

Cellfoundry: a GPU-accelerated, multi-physics ABM framework for cellular microenvironment and organoid-scale studies

Cellfoundry is a GPU-accelerated agent-based modeling framework for simulating cellular microenvironments, enabling the study of complex interactions between cells, extracellular matrix, and biochemical signals.

GPU acceleration of cell-based simulations in Chaste using FLAME GPU 2

This paper integrates FLAME GPU 2 with Chaste to accelerate cell-based simulations, achieving significant speedups and improved mechanical modeling accuracy.

The Fruit Fly Brain Observatory: From Structure to Function

The paper introduces the Fruit Fly Brain Observatory, an open-source platform for integrating and analyzing fruit fly brain data and models.

NeuroNLP: a natural language portal for aggregated fruit fly brain data

NeuroNLP provides a web-based portal for exploring fruit fly brain circuit data using natural language queries and 3D visualization.

The Fruit Fly Brain Observatory: from structure to function

The paper introduces the Fruit Fly Brain Observatory, an open platform for integrating and visualizing fruit fly brain data and models, with tools for querying and simulating neural circuits.