Author

Kristen M. Turner

University of California San DiegoORCID 0000-0002-4661-3094Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Paul S. MischeliD· 3 shared Vineet BafnaiD· 3 shared Jens LuebeckiD· 2 shared Utkrisht RajkumariD· 2 shared Viraj DeshpandeiD· 2 shared Anton George HensseniD· 1 shared Ceyda ÇoruhiD· 1 shared Chao ZhangiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersBioinformatics

Paul S. MischelORCID

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJun 23, 2025

Accurate Prediction of ecDNA in Interphase Cancer Cells using Deep Neural Networks

Utkrisht Rajkumar, Gino Prasad, Ellis J. Curtis…·Vineet Bafna

The paper introduces interSeg, a deep learning tool that accurately predicts oncogene amplification status from interphase FISH images, achieving high accuracy in detecting ecDNA and chromosomal amplifications.

2 citations

humanfluorescence / live-cell microscopy

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 22, 2020

AmpliconReconstructor: Integrated analysis of NGS and optical mapping resolves the complex structures of focal amplifications in cancer

Jens Luebeck, Ceyda Çoruh, Siavash R. Dehkordi…·Vineet Bafna

AmpliconReconstructor integrates optical mapping and NGS to resolve focal amplifications in cancer, revealing complex structures and origins of ecDNA and other rearrangements.

2 citations

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintOct 30, 2018

Reconstructing and characterizing focal amplifications in cancer using AmpliconArchitect

Viraj Deshpande, Jens Luebeck, Mehrdad Bakhtiari…·Vineet Bafna

AmpliconArchitect reconstructs focal amplifications in cancer genomes, revealing novel insights into extrachromosomal mechanisms and oncoviral pathogenesis.

2 citations

humanwhole-genome sequencing

𝕏 PostBluesky