Author

Siavash R. Dehkordi

University of California San DiegoORCID 0000-0003-3848-7267Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Vineet BafnaiD· 2 shared Alex R. HastieiD· 1 shared Alka ChaubeyiD· 1 shared Andy Wing Chun PangiD· 1 shared Ceyda ÇoruhiD· 1 shared Chao ZhangiD· 1 shared Dave A. Pai· 1 shared Jen Hauenstein· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenetic & Genomic Medicine

Vineet BafnaORCID

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2 papers

Recent·Most cited

Genetic & Genomic MedicineGenome ResearchPeer-reviewedDec 1, 2025

OMKar automates genome karyotyping using optical maps to identify constitutional abnormalities

Siavash R. Dehkordi, Zhaoyang Jia, Joey C. Estabrook…·Vineet Bafna

OMKar generates virtual karyotypes from optical genome mapping data to identify constitutional abnormalities with high precision and recall.

2 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 22, 2020

AmpliconReconstructor: Integrated analysis of NGS and optical mapping resolves the complex structures of focal amplifications in cancer

Jens Luebeck, Ceyda Çoruh, Siavash R. Dehkordi…·Vineet Bafna

AmpliconReconstructor integrates optical mapping and NGS to resolve focal amplifications in cancer, revealing complex structures and origins of ecDNA and other rearrangements.

2 citations

humanwhole-genome sequencing

𝕏 PostBluesky