Author

Ceyda Çoruh

Salk Institute for Biological StudiesORCID 0000-0002-7348-6721Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:Arabidopsis· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Research Focus:genome assembly· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Julie A. LawiD· 3 shared Bart RymeniD· 1 shared Calvin Matteoli· 1 shared Chao ZhangiD· 1 shared Christophe Himber· 1 shared Dave A. Pai· 1 shared Dmitry TorchinskyiD· 1 shared Elmar G. WeinholdiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersMolecular Biology

Julie A. LawORCID

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3 papers

Recent·Most cited

CLSY docking to Pol IV requires a conserved domain critical for small RNA biogenesis and transposon silencing.

Luisa Felgines, Bart Rymen, Laura M. Martins, Guanghui Xu, Calvin Matteoli, Christophe Himber, Ming Zhou, Josh Eis, Ceyda Çoruh, Marcel Böhrer, Lauriane Kühn, Johana Chicher, Vijaya Pandey, Philippe Hammann, James Akira Wohlschlegel, , Todd Blevins

The paper identifies a conserved CYC-YPMF motif in Pol IV critical for CLSY docking, essential for small RNA biogenesis and transposon silencing.

Nature Communications · Nov 27, 2024Peer-reviewedMolecular Biology

Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping

Tslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Sapir Margalit, Leonie Schütz, Matyas Juhasz, Ceyda Çoruh, Nissim Arbib, Zhaohui Sunny Zhou, Julie A. Law, Elmar G. Weinhold, Yuval Ebenstein

This paper develops a chemoenzymatic method to label non-methylated CpGs in DNA, enabling single-molecule epigenetic profiling in human and plant genomes.

Nucleic Acids Research · Jun 3, 2022Peer-reviewedGenomics

AmpliconReconstructor: Integrated analysis of NGS and optical mapping resolves the complex structures of focal amplifications in cancer

Jens Luebeck, Ceyda Çoruh, Siavash R. Dehkordi, Joshua T. Lange, Kristen M. Turner, Viraj Deshpande, Dave A. Pai, Chao Zhang, Utkrisht Rajkumar, Julie A. Law, Paul S. Mischel, Vineet Bafna

AmpliconReconstructor integrates optical mapping and NGS to resolve focal amplifications in cancer, revealing complex structures and origins of ecDNA and other rearrangements.

bioRxiv · Jan 22, 2020 · PreprintBioinformatics