Author
Center for Advanced Studies Research and Development in SardiniaORCID 0000-0002-4663-5613Unclaimed ORCID profile · follow to get notified of new preprints
7 papers
Recent·Most cited
David Johnson, Dominique Batista, Keeva Cochrane…·Philippe Rocca‐Serra
The paper introduces the ISA API, a Python library for handling ISA-Tab and ISA-JSON metadata formats, enabling programmatic manipulation and interoperability in life science experiments.
Payam Emami Khoonsari, Pablo A Moreno, Sven Bergmann…·Ola Spjuth
The paper introduces a microservices-based framework for scalable data analysis, validated in metabolomics, enabling dynamic scaling and integration of software tools.
Pablo A Moreno, Luca Pireddu, Pierrick Roger…·Steffen Neumann
This paper integrates Galaxy with Kubernetes to enable scalable, cloud-agnostic bioinformatics workflows.
Kristian Peters, James Bradbury, Sven Bergmann…·Christoph Steinbeck
PhenoMeNal provides a cloud-based platform for metabolomics data analysis, integrating tools and workflows to enable reproducible and scalable research.
Francesco Versaci, Luca Pireddu, Gianluigi Zanetti
The paper proposes using Kafka streams to improve genomic data processing pipelines by enabling scalable, fault-tolerant, and composable workflows.
Marco Enrico Piras, Luca Pireddu, Gianluigi Zanetti
wft4galaxy provides automated testing for Galaxy workflows to enable continuous integration and defect detection.
Francesco Versaci, Luca Pireddu, Gianluigi Zanetti
This paper demonstrates a scalable sequence alignment pipeline for Illumina data using Apache YARN, achieving linear scalability and fault tolerance.