Author

Ira Fleming

Broad InstituteORCID 0000-0002-4691-6933Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Research Focus:cell-cell communication· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Abrianna M Qvale· 1 shared Alex K. ShalekiD· 1 shared Amiko M. UchidaiD· 1 shared Aspen Uecker-Martin· 1 shared Benjamin A. DoraniD· 1 shared Bennett DavenportiD· 1 shared Beth A. Jirón TamburiniiD· 1 shared Conner KummerloweiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperImmunology

Abrianna M Qvale

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2 papers

Recent·Most cited

ImmunologyNature CommunicationsPeer-reviewedSep 25, 2025

A specific and portable gene expression program underlies antigen archiving by lymphatic endothelial cells

Ryan M. Sheridan, Thu A. Doan, Cormac J. Lucas…·Beth A. Jirón Tamburini

The paper identifies a unique transcriptional program in lymphatic endothelial cells that predicts antigen archiving capacity and validates it across datasets and in vivo.

9 citations

mousescRNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintApr 11, 2021

Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation in severe disease

Conner Kummerlowe, Thomas E. Wallach, Simutanyi Mwakamui…·Paul M. Kelly

The paper uses single-cell RNA-sequencing to study environmental enteropathy, identifying epithelial and immune correlates of disease severity and suggesting new therapeutic targets.

8 citations

humanscRNA-seq

𝕏 PostBluesky