Author

Paul M. Kelly

Queen Mary University of LondonORCID 0000-0003-0844-6448Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alex K. ShalekiD· 1 shared Amiko M. UchidaiD· 1 shared Benjamin A. DoraniD· 1 shared Celia Louise GregsoniD· 1 shared Christoph Leschczyk· 1 shared Conner KummerloweiD· 1 shared Ellen C. BesaiD· 1 shared Gajanan Thirumoolanathan· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Alex K. ShalekORCID

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3 papers

Recent·Most cited

GenomicsPhilosophical Transactions of the Royal Society B Biological SciencesPeer-reviewedMay 14, 2026

A META-ANALYSIS OF GUT MICROBIOME RESEARCH IN MALNOURISHED AFRICAN POPULATIONS: A NATURAL LANGUAGE PROCESSING APPROACH

Monica N. Mweetwa, Paul M. Kelly, Joram Matthias Posma

This paper uses NLP to analyze gut microbiome studies in malnourished African children, identifying microbial signatures and associations with malnutrition.

1 citation

humanmetagenomics

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MicrobiologybioRxivPreprintNov 20, 2025

The effect of vitamin D and calcium supplementation on gut microbiota composition in adolescents living with HIV in Southern Africa

Matthias Hauptmann, Nyasha Veronica Dzavakwa, Mizinga Jacqueline Tembo…·Ulrich Emil Schaible

This study examines how vitamin D and calcium supplementation affects gut microbiota in HIV-positive adolescents, finding reduced Clostridia abundance and microbiota influence on PTH and bone density.

DOI 10.1101/2025.11.20.689294

humanmetagenomics

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GenomicsbioRxivPreprintApr 11, 2021

Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation in severe disease

Conner Kummerlowe, Thomas E. Wallach, Simutanyi Mwakamui…·Paul M. Kelly

The paper uses single-cell RNA-sequencing to study environmental enteropathy, identifying epithelial and immune correlates of disease severity and suggesting new therapeutic targets.

8 citations

humanscRNA-seq

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