Author

John G. Swales

AstraZeneca (United Kingdom)ORCID 0000-0002-4792-0037Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Assay:metabolomics· 1

Frequent Co-Authors

Richard J. A. GoodwiniD· 2 shared Zoltán TakátsiD· 2 shared Adam J. TayloriD· 1 shared Alex DexteriD· 1 shared Andrew D. CampbelliD· 1 shared Andrew PalmeriD· 1 shared Angelos RigopoulosiD· 1 shared Arafath Kaja NajumudeeniD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Richard J. A. GoodwinORCID

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Author profile →

2 papers

Recent·Most cited

Training a neural network to learn other dimensionality reduction removes data size restrictions in bioinformatics and provides a new route to exploring data representations

Alex Dexter, Spencer A. Thomas, Rory T. Steven, Kenneth N. Robinson, Adam J. Taylor, Efstathios Andreas Elia, Chelsea J. Nikula, Andrew D. Campbell, Yulia Panina, Arafath Kaja Najumudeen, Teresa Murta, Bin Lun Yan, Piotr Grabowski, Gregory R. Hamm, John G. Swales, , Josephine Bunch

The paper uses deep learning with t-SNE to analyze large datasets and overcome size limitations in bioinformatics.

bioRxiv · Sep 3, 2020 · PreprintBioinformatics

METASPACE: A community-populated knowledge base of spatial metabolomes in health and disease

Theodore Alexandrov, Katja Ovchinnikova, Andrew Palmer, Vitaly Kovalev, Artem Tarasov, Lachlan Stuart, Renat Nigmetzianov, Dominik Fay, Key METASPACE contributors, Mathieu Gaudin, Cristina López, Marina Vetter, John G. Swales, Mark T. Bokhart, Mario Kompauer, , Sheerin K. Shahidi-Latham

An open-source cloud engine annotates imaging mass spectrometry data at controlled false discovery rate; publicly shared results reached over 3200 datasets and 6 million metabolite images by January 2019.

bioRxiv · Feb 13, 2019 · PreprintSystems Biology✦ In-depth digest