A framework to trace microbial engraftment at the strain level during fecal microbiota transplantation
Yiqi Jiang, Shuai Wang, Yanfei Wang, Xianglilan Zhang, Shuai Cheng Li
The paper introduces PStrain-tracer, a software package to track microbial strain engraftment during FMT using shotgun metagenomic data, revealing strain-specific engraftment patterns and failure determinants.
bioRxiv · May 18, 2022 · PreprintBioinformatics