Yiqi Jiang

This paper introduces CAML, a deep learning model that improves protein function prediction by integrating sequence, structure, and contig-level CDS topology features, achieving significant performance gains over existing methods.

GutMeta provides an online platform for analyzing and visualizing human gut metagenomic data with a curated database and analysis tools.

The paper introduces PStrain-tracer, a software package to track microbial strain engraftment during FMT using shotgun metagenomic data, revealing strain-specific engraftment patterns and failure determinants.

This study uses simulation and sequencing data to show that multiple SARS-CoV-2 variants can coexist in COVID-19 patients, with an increase in the number of coinfected variants over time.

CovProfile identifies viral genomic variations and gene expressions from SARS-CoV-2 Nanopore sequences, revealing multiple strains and high expression of viral genes in patient samples.

This paper introduces a new distance metric, dr, that satisfies the triangular inequality for gene expression profiles and shows it provides more robust clustering than the absolute correlation distance.