Author

Stepan Saenko

Universität GreifswaldORCID 0000-0002-4925-1308Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Organism:multiple species· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Mario StankeiD· 2 shared Felix BeckeriD· 1 shared Joscha DiehliD· 1 shared Jüergen KreylingiD· 1 shared Katharina J. HoffiD· 1 shared Kerstin HaldaniD· 1 shared Kristina V. KuprinaiD· 1 shared Manuela BogiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Mario StankeORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 30, 2026

Vipsania: Unsupervised Deep Gene Finding

Richard Krieg, Felix Becker, Stepan Saenko…·Mario Stanke

Vipsania is an unsupervised deep learning model for gene finding in eukaryotic genomes, achieving higher accuracy than supervised methods across most clades.

DOI 10.64898/2026.08.26.747235

multiple specieswhole-genome sequencing

𝕏 PostBluesky

GenomicsScientific DataPeer-reviewedFeb 19, 2026

Annotation of 200 Insect Genomes with BRAKER for Consistent Comparisons across Species

Stepan Saenko, Katharina J. Hoff, Mario Stanke

The paper annotates 200 insect genomes using BRAKER3 and VARUS to enable consistent comparative genomics analyses across species.

DOI 10.1038/s41597-026-06840-0

multiple speciesprotein sequence

𝕏 PostBluesky

EcologyPlant Cell ReportsPeer-reviewedAug 12, 2025

How drought and ploidy level shape gene expression and DNA methylation in Phragmites australis

Kristina V. Kuprina, Kerstin Haldan, Stepan Saenko…·Manuela Bog

This study examines how drought and ploidy level affect gene expression and DNA methylation in Phragmites australis, identifying shared drought-response genes and ploidy-specific expression patterns.

4 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky