Deepurify: a multi-modal deep language model to remove contamination from metagenome-assembled genomes
bohao ZOU, Jingjing Wang, Yi Ding, Zhenmiao Zhang, Yufen Huang, Xiaodong Fang, Ka Chun Cheung, Simon Chong Wee See, Lu Zhang
Deepurify uses a multi-modal deep language model with contrastive learning to improve MAG decontamination by leveraging genomic sequences and taxonomic lineages.
bioRxiv · Sep 27, 2023 · PreprintGenomics