Author

Hari Deo Upadhyaya

International Crops Research Institute for the Semi-Arid TropicsORCID 0000-0002-5166-6844Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:genome assembly· 1 Research Focus:GWAS / association mapping· 1 Research Focus:imputation· 1

Frequent Co-Authors

Santosh DeshpandeiD· 2 shared Abhishek RathoreiD· 1 shared Daniel C. IlutiD· 1 shared Edward S. BuckleriD· 1 shared Gaël PressoiriD· 1 shared Geoffrey P. MorrisiD· 1 shared Guillaume P. RamsteiniD· 1 shared Jason G. WallaceiD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Santosh DeshpandeORCID

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2 papers

Recent·Most cited

A sorghum Practical Haplotype Graph facilitates genome-wide imputation and cost-effective genomic prediction

Sarah E. Jensen, Jean Rigaud Charles, Kebede T. Muleta, Peter J. Bradbury, Terry M. Casstevens, Santosh Deshpande, Michael A. Gore, Rajeev Gupta, Daniel C. Ilut, Lynn Johnson, Roberto Daniel Lozano, Zachary R. Miller, Punna Ramu, Abhishek Rathore, M. Cinta Romay, , Guillaume P. Ramstein

This paper introduces a sorghum Practical Haplotype Graph (PHG) that enables accurate SNP calling and imputation from low-coverage sequencing data, improving genomic prediction accuracy and reducing genotyping costs.

The Plant Genome · Mar 1, 2020Peer-reviewedGenomics

Genome-wide Population Structure Analyses of Three Minor Millets: Kodo Millet, Little Millet, and Proso Millet

Matthew S. Johnson, Santosh Deshpande, Mani Vetriventhan, Hari Deo Upadhyaya, Jason G. Wallace

The paper presents genome-wide marker datasets and population structure analyses for three minor millets, revealing subpopulations and validating SNP accuracy using phenotype data.

The Plant Genome · Sep 5, 2019Peer-reviewedGenetics