CosMxScope: Scalable Reconstruction and Digital Pathology Integration of Imaging-Based Spatial Transcriptomics Data
Jie Chen, Brian Robert Isett, Qiangqiang Gu, Riyue Bao
CosMxScope integrates spatial transcriptomics data with digital pathology tools by stitching images, converting spatial data to GeoJSON, and enabling visualization of gene expression and cell types.
bioRxiv · Mar 30, 2026 · PreprintBioinformatics