Oliver Eulenstein

SmartHisto: Bayesian Active Learning for Histology Images

SmartHisto reduces annotation effort for histopathology images using Bayesian active learning, achieving higher mean IoU than competing methods.

A PLUM Job: Peptide modeLs for Understanding and engineering antiMicrobial therapeutics

PLUM generates antimicrobial peptides with controlled function and length, achieving high yields and diverse sequences with favorable predicted properties.

Quantifying Asymmetric Coevolutionary Dynamics using Normalized Phylogenetic Costs

The paper introduces normalized asymmetric phylogenetic costs to quantify coevolutionary dynamics, showing they capture complex relationships in virus-host systems and detect novel gene pairings in viral genomes.

PREMISE: A Quality-Aware Probabilistic Framework for High-Resolution Source Assignment in Metagenomic Sequencing

PREMISE improves metagenomic source assignment by using a quality-aware probabilistic framework, achieving high accuracy in both species and strain-level classification.

Phylo-rs: an extensible phylogenetic analysis library in Rust

Phylo-rs provides a fast, extensible Rust library for phylogenetic analysis with WebAssembly support and open-source availability.

Discovering genomic islands in unannotated bacterialgenomes using sequence embedding

This paper introduces TreasureIsland, a method for detecting genomic islands in unannotated bacterial genomes, showing competitive performance against existing predictors.