Author

Diptodip Deb

Howard Hughes Medical InstituteORCID 0000-0002-5352-3337Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:imaging· 1 Research Focus:software / tool· 1 Organism:zebrafish· 1

Frequent Co-Authors

Srinivas C. TuragaiD· 2 shared Alex CheniD· 1 shared Amey ChawareiD· 1 shared Amit KohliiD· 1 shared Arlo SheridaniD· 1 shared Armin BahliD· 1 shared Benedict DiederichiD· 1 shared Cedric P. AllieriD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersBioinformatics

Srinivas C. TuragaORCID

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3 papers

Recent·Most cited

Chromatix: a differentiable, GPU-accelerated wave-optics library

Diptodip Deb, Gert‐Jan Both, Eric Bezzam, Amit Kohli, Siqi Yang, Amey Chaware, Cedric P. Allier, Changjia Cai, Geneva Anderberg, M. Hossein Eybposh, Magdalena C. Schneider, Rainer Heintzmann, Fabrizio A. Rivera-Sanchez, Corey Simmerer, Guanghan Meng, , Srinivas C. Turaga

Chromatix provides a differentiable, GPU-accelerated wave-optics library to enable fast and parallelized optical simulations for computational optics applications.

Nature Methods · Jun 8, 2026Peer-reviewedBioinformatics

Local Shape Descriptors for Neuron Segmentation

Arlo Sheridan, Tri Nguyen, Diptodip Deb, Wei-Chung Allen Lee, Stephan Saalfeld, Srinivas C. Turaga, Uri Manor, Jan Funke

This paper introduces an auxiliary learning task using Local Shape Descriptors to improve neuron segmentation in electron microscopy volumes, achieving performance comparable to state-of-the-art methods with greater efficiency.

Nature Methods · Dec 30, 2022Peer-reviewedNeuroscience

Algorithms underlying flexible phototaxis in larval zebrafish

Alex Chen, Diptodip Deb, Armin Bahl, Florian Engert

This study shows larval zebrafish use a homeostatic algorithm to adjust their phototactic behavior based on luminance history and environmental changes.

Journal of Experimental Biology · Apr 25, 2021Peer-reviewedNeuroscience