Author
Harvard UniversityORCID 0000-0002-5436-4219Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
J. H. Jensen, Sagun Maharjan, Philipp C. Münch…·Curtis Huttenhower
BAQLaVa improves viral profiling from metagenomes and metatranscriptomes, revealing reduced virome diversity in inflammatory bowel diseases and novel phage-host relationships.
William A. Nickols, Lauren J. McIver, Aaron M. Walsh…·Kelsey N. Thompson
The paper evaluates metagenomic analysis methods in simulated and real environmental data, finding that newer marker-based methods perform better at lower taxonomic levels.
Tiffany Y. Hsu, Étienne Nzabarushimana, Dennis H.-J. Wong…·Eric A. Franzosa
The paper develops and validates a method to detect novel lateral gene transfer events in human microbiomes, identifying over 100K putative LGT events across >2K metagenomes.
Siyuan Ma, Dmitry Shungin, Himel Mallick…·Curtis Huttenhower
The paper develops MMUPHin for meta-analysis of microbial communities in IBD, identifying consistent microbial associations and showing no discrete microbiome types.