Author

Aaron M. Walsh

Broad InstituteORCID 0000-0001-7058-728XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Anjali S YennemadiiD· 1 shared Curtis HuttenhoweriD· 1 shared Dearbhla M MurphyiD· 1 shared Eric A. FranzosaiD· 1 shared Erica Marie HartmanniD· 1 shared Francesco AsnicariD· 1 shared Gina R. LeischingiD· 1 shared Grainne Jameson· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperImmunology

Anjali S YennemadiORCID

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2 papers

Recent·Most cited

ImmunologyScientific ReportsPeer-reviewedMay 7, 2026

HIV inhibits Warburg metabolism in human macrophages infected with Mycobacterium tuberculosis.

Kevin Edward Brown, Aaron M. Walsh, Anjali S Yennemadi…·Joseph Keane

This study shows HIV-1 infection suppresses Mtb-induced glycolytic reprogramming in macrophages, altering immunometabolic responses and increasing TB susceptibility.

2 citationstop 4%

humanbulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintNov 8, 2024

Evaluating metagenomic analyses for undercharacterized environments: what's needed to light up the microbial dark matter?

William A. Nickols, Lauren J. McIver, Aaron M. Walsh…·Kelsey N. Thompson

The paper evaluates metagenomic analysis methods in simulated and real environmental data, finding that newer marker-based methods perform better at lower taxonomic levels.

3 citations

metagenomicsstatistical model

𝕏 PostBluesky