Author

Ivan T. Lee

Stanford MedicineORCID 0000-0002-5446-2046Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Alexandar TzankoviD· 2 shared Bokai ZhuiD· 2 shared David R. McIlwainiD· 2 shared Garry P. NolaniD· 2 shared Matthias Sebastian MatteriD· 2 shared Sizun JiangiD· 2 shared Andrew Z Ma· 1 shared Carol H. YaniD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

Alexandar TzankovORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Coordinated immune-epithelial dynamics in the nasal epithelium protect against respiratory virus infection

Yao Yu Yeo, Hsin‐Yi Chen, Bokai Zhu, Y Wang, Ivan T. Lee, Tsuguhisa Nakayama, Y Wang, Huaying Qiu, Kate B. Juergens, Sei Chung, Carol H. Yan, Clara S Kummerer, Hendrik A. Michel, Andrew Z Ma, Wenrui Wu, , Sizun Jiang

The paper identifies IL13-driven immune-epithelial remodeling in the nasal epithelium that restricts respiratory virus infection by reshaping the mucus barrier.

bioRxiv · Jun 9, 2026 · PreprintImmunology

Robust Single-cell Matching and Multi-modalAnalysis Using Shared and Distinct FeaturesReveals Orchestrated Immune Responses

Bokai Zhu, Shuxiao Chen, Yunhao Bai, Han M. Chen, Guanrui Liao, Nilanjan Mukherjee, Gustavo Vazquez, David R. McIlwain, Alexandar Tzankov, Ivan T. Lee, Matthias Sebastian Matter, Yury Goltsev, Zongming Ma, Garry P. Nolan, Sizun Jiang

The paper introduces MARIO, a cell matching algorithm that integrates single-cell proteomic and multi-modal data, revealing orchestrated immune responses in lung tissue.

Nature Methods · Jan 9, 2023Peer-reviewedBioinformatics