Author

Kami Chiotti

Oregon Health & Science UniversityORCID 0000-0002-5466-4019Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Organism:human· 1 Approach:transformer / foundation model· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Adriana SalcedoiD· 1 shared Alex Buchanan· 1 shared Amit G. DeshwariD· 1 shared Beth Y. KarlaniD· 1 shared Cassidy L. AndrasziD· 1 shared Clemency JollyiD· 1 shared Daniel S. GerkeiD· 1 shared David AtkinsoniD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Adriana SalcedoORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 5, 2026

Genome-wide classification of tumor-derived reads from bulk long-read sequencing

Toby M. Baker, Nedas Matulionis, Cassidy L. Andrasz…·Paul T. Spellman

ROCIT classifies tumor or non-tumor origin of reads from bulk long-read sequencing with high accuracy, improving somatic variant calling in tumors.

1 citation

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintJun 14, 2022

Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction

Adriana Salcedo, Maxime Tarabichi, Alex Buchanan…·Paul Christopher Boutros

The paper benchmarks 31 subclonal reconstruction algorithms on simulated tumours, finding that algorithm choice significantly impacts performance and no single algorithm excels across all tasks.

1 citation

whole-exome sequencingbenchmark study

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