Author

Markus R. Schmidt

Hanyang UniversityORCID 0000-0002-5601-6349Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:graph neural network· 1 Assay:long-read sequencing· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1 Organism:yeast· 1

Frequent Co-Authors

Arne KutzneriD· 2 shared Pok‐Son KimiD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

2 top collaborators · 1 mutual co-author link

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Arne KutznerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 12, 2021

State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?

Markus R. Schmidt, Arne Kutzner

This paper identifies conceptual issues in structural variant calling and proposes a graph-based approach to resolve them, demonstrating accuracy on yeast genomes.

1 citation

yeastwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedJul 23, 2020

A performant bridge between fixed-size and variable-size seeding

Arne Kutzner, Pok‐Son Kim, Markus R. Schmidt

The paper introduces a merge-extend strategy for computing MEMs from fixed-size seeds and benchmarks its performance against existing methods.

19 citations

long-read sequencingstatistical model

𝕏 PostBluesky