Author

David Geller‐McGrath

Woods Hole Oceanographic InstitutionORCID 0000-0002-5629-9983Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Virginia P. EdgcombiD· 3 shared Maria PachiadakiiD· 2 shared Paraskevi MaraiD· 2 shared Andreas TeskeiD· 1 shared David BeaudoiniD· 1 shared Elizabeth A. SuteriD· 1 shared Gordon T. TayloriD· 1 shared Jack W. RoddyiD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersBioinformatics

Virginia P. EdgcombORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MetaPathPredict: A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes

David Geller‐McGrath, Kishori M. Konwar, Virginia P. Edgcomb, Maria Pachiadaki, Jack W. Roddy, Travis J. Wheeler, Jason McDermott

MetaPathPredict predicts KEGG module presence in incomplete bacterial genomes using machine learning models.

eLife · Apr 16, 2024Peer-reviewedBioinformatics

Metagenomic Profiles of Archaea and Bacteria within Thermal and Geochemical Gradients of the Guaymas Basin Deep Subsurface

David Geller‐McGrath, Paraskevi Mara, Virginia P. Edgcomb, David Beaudoin, Yuki Morono, Andreas Teske

The paper examines microbial community and activity patterns in the Guaymas Basin subsurface along thermal and geochemical gradients using metagenomic and metatranscriptomic analyses.

bioRxiv · May 31, 2023 · PreprintBioinformatics

Diverse secondary metabolites are expressed in particle-associated and free-living microorganisms of the permanently anoxic Cariaco Basin

David Geller‐McGrath, Paraskevi Mara, Gordon T. Taylor, Elizabeth A. Suter, Virginia P. Edgcomb, Maria Pachiadaki

The paper identifies secondary metabolites in anoxic Cariaco Basin microorganisms using genome mining and gene expression analysis, showing redox potential and lifestyle affect their production.

Nature Communications · Feb 6, 2023Peer-reviewedBioinformatics