Author

Paraskevi Mara

Woods Hole Oceanographic InstitutionORCID 0000-0003-0072-0238Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Virginia P. EdgcombiD· 3 shared Andreas TeskeiD· 2 shared David BeaudoiniD· 2 shared David Geller‐McGrathiD· 2 shared Yuki MoronoiD· 2 shared Brewster F. KinghamiD· 1 shared Diana P. BojanovaiD· 1 shared Elizabeth A. SuteriD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Virginia P. EdgcombORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintApr 15, 2024

The DNA event horizon in the Guaymas Basin subsurface biosphere: technical advances and re-defined limits in bulk extractions of nucleic acids from deep marine sediments

Gustavo A. Ramírez, Paraskevi Mara, David Beaudoin…·Andreas Teske

The paper evaluates DNA and RNA extraction protocols from Guaymas Basin sediments, showing that temperature and hydrothermal influence significantly impact nucleic acid recovery and microbial community analysis.

1 citation

DNA methylationbulk RNA-seq

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BioinformaticsbioRxivPreprintMay 31, 2023

Metagenomic Profiles of Archaea and Bacteria within Thermal and Geochemical Gradients of the Guaymas Basin Deep Subsurface

David Geller‐McGrath, Paraskevi Mara, Virginia P. Edgcomb…·Andreas Teske

The paper examines microbial community and activity patterns in the Guaymas Basin subsurface along thermal and geochemical gradients using metagenomic and metatranscriptomic analyses.

3 citations

metagenomicsstatistical model

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BioinformaticsNature CommunicationsPeer-reviewedFeb 6, 2023

Diverse secondary metabolites are expressed in particle-associated and free-living microorganisms of the permanently anoxic Cariaco Basin

David Geller‐McGrath, Paraskevi Mara, Gordon T. Taylor…·Maria Pachiadaki

The paper identifies secondary metabolites in anoxic Cariaco Basin microorganisms using genome mining and gene expression analysis, showing redox potential and lifestyle affect their production.

49 citationstop 1%

whole-genome sequencingstatistical model

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