Author

Maria Pachiadaki

Woods Hole Oceanographic InstitutionORCID 0000-0003-2684-7501Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

David Geller‐McGrathiD· 2 shared Virginia P. EdgcombiD· 2 shared Elizabeth A. SuteriD· 1 shared Frank J. StewartiD· 1 shared Gordon T. TayloriD· 1 shared Jack W. RoddyiD· 1 shared Janet K. HattiD· 1 shared Jason McDermottiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

David Geller‐McGrathORCID

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3 papers

Recent·Most cited

MicrobiologyThe ISME JournalPeer-reviewedJan 1, 2025

Promiscuous and unbiased recombination underlies the sequence-discrete species of the SAR11 lineage in the deep ocean

Jianshu Zhao, Maria Pachiadaki, Roth E. Conrad…·Konstantinos T. Konstantinidis

The paper shows SAR11 bacteria use promiscuous recombination to form sequence-discrete species with lower ANI thresholds than other microbes.

4 citations

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticseLifePeer-reviewedApr 16, 2024

MetaPathPredict: A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes

David Geller‐McGrath, Kishori M. Konwar, Virginia P. Edgcomb…·Jason McDermott

MetaPathPredict predicts KEGG module presence in incomplete bacterial genomes using machine learning models.

25 citations

bacteria (other)whole-genome sequencing

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BioinformaticsNature CommunicationsPeer-reviewedFeb 6, 2023

Diverse secondary metabolites are expressed in particle-associated and free-living microorganisms of the permanently anoxic Cariaco Basin

David Geller‐McGrath, Paraskevi Mara, Gordon T. Taylor…·Maria Pachiadaki

The paper identifies secondary metabolites in anoxic Cariaco Basin microorganisms using genome mining and gene expression analysis, showing redox potential and lifestyle affect their production.

49 citationstop 1%

whole-genome sequencingstatistical model

𝕏 PostBluesky