Author

Carolina S. Carpenter

University of California San DiegoORCID 0000-0002-5716-3068Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Assay:metabolomics· 2 Assay:metagenomics· 2 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Austin D.-E. SwaffordiD· 3 shared Rob D. KnightiD· 3 shared Julia M. GauglitziD· 2 shared Kelly C. WeldoniD· 2 shared Pieter C. DorresteiniD· 2 shared Alan K. JarmuschiD· 1 shared Alexander A. AksenoviD· 1 shared Alexey V. MelnikiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Austin D.-E. SwaffordORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 10, 2023

Reply to: Caution Regarding the Specificities of Pan-Cancer Microbial Structure

Gregory D. Sepich‐Poore, Evguenia Kopylova, Qiyun Zhu…·Rob D. Knight

The authors reanalyze their pan-cancer microbiome findings using decontaminated data to address concerns about contamination, batch effects, and machine learning approaches.

13 citations

humanmetagenomics

𝕏 PostBluesky

Systems BiologymSystemsPeer-reviewedMar 9, 2020

Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs

Julia M. Gauglitz, James T. Morton, Anupriya Tripathi…·Pieter C. Dorrestein

The paper uses metabolomics to correct metadata classifications in cheetah microbiome studies, revealing antibiotic transfer via grooming and improving understanding of medication effects.

16 citations

non-human primatemetabolomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 28, 2019

MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data.

Mingxun Wang, Alan K. Jarmusch, Fernando Vargas…·Pieter C. Dorrestein

MASST enables querying of public small-molecule tandem MS data to discover molecular relationships in metabolomics and natural product datasets.

14 citations

metagenomicsmetabolomics

𝕏 PostBluesky