Author

Sirjan Sapkota

Clemson UniversityORCID 0000-0002-5718-3544Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Andrew C. OlsoniD· 1 shared Cornel Ghiban· 1 shared Cristina Fernandez MarcoiD· 1 shared David Andrew Micklos· 1 shared Demitri Muna· 1 shared Doreen WareiD· 1 shared Fei‐Man HsuiD· 1 shared Hao WuiD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Andrew C. OlsonORCID

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2 papers

Recent·Most cited

Multi-trait regressor stacking increased genomic prediction accuracy of sorghum grain composition

Sirjan Sapkota, Jon Lucas Boatwright, Kathleen E. Jordan, Richard Elmer Boyles, Stephen Kresovich

This study shows that the BMORS model improves genomic prediction accuracy for sorghum grain composition traits compared to single-trait models.

Agronomy · Aug 19, 2020Peer-reviewedGenomics

Double triage to identify poorly annotated genes in Maize: The missing link in community curation

Marcela Karey Tello-Ruiz, Cristina Fernandez Marco, Fei‐Man Hsu, Rajdeep S. Khangura, Pengfei Qiao, Sirjan Sapkota, Michelle C. Stitzer, Rachael Wasikowski, Hao Wu, Junpeng Zhan, Kapeel M. Chougule, Lindsay Barone, Cornel Ghiban, Demitri Muna, Andrew C. Olson, , David Andrew Micklos

The paper identifies poorly annotated genes in maize using a double triage approach combining quality metrics and gene tree visualization, revealing 4,000 novel annotations.

PLoS ONE · Oct 28, 2019Peer-reviewedBioinformatics