Tiburon L. Benavides

Allosteric Protein Chemical Shift Perturbations are Ubiquitous

The paper analyzes NMR chemical shift perturbations in protein complexes to show that structural plasticity is widespread, with 74% of significant CSPs occurring non-locally to the binding site.

Modeling Alternative Conformational States in CASP16

This paper evaluates methods for modeling multi-state protein and RNA systems in CASP16, finding improved accuracy for some targets but persistent challenges in capturing structural details for others.

Integrative Modeling of Protein-Polypeptide Complexes by Bayesian Model Selection using AlphaFold and NMR Chemical Shift Perturbation Data

CSP_Rank improves protein-peptide complex structure modeling by integrating AlphaFold2 with NMR chemical shift perturbation data through Bayesian conformational selection.

HMMSTRTM: A hidden Markov model for local structure prediction in globular and membrane associated proteins

HMMSTRTM predicts transmembrane protein topology using a Hidden Markov Model, achieving high accuracy in residue prediction.