Timothy G. Amos

The paper examines DNA methylation dynamics in marsupial embryos, finding global demethylation in the trophectoderm but not the embryonic lineage, suggesting 5mC erasure in extraembryonic tissue is ancestral in therian mammals.

The paper analyzes mitochondrial genomes of cane toads across their invasion trajectory, revealing genetic bottlenecks and previously underestimated diversity in introduced populations.

slow5tools converts and manipulates nanopore sequencing data in the SLOW5 format, offering efficient and flexible data handling with performance improvements over FAST5.

This paper presents a chromosome-level genome assembly for Telopea speciosissima using long-reads, linked-reads, and Hi-C data, along with new tools for genome curation and size estimation.

The paper introduces SLOW5, a new file format for nanopore sequencing data that accelerates analysis on HPC systems by enabling efficient parallelization.