Qingwen Li

The paper introduces UMImap, a pipeline for accurate UMI identification and error correction in nanopore sequencing, enabling reliable full-length transcriptome analysis and discovery of novel isoforms.

GCRTcall improves RNA basecalling accuracy using a Transformer with gated convolution and relative position embedding, achieving state-of-the-art performance.

This paper introduces BaseNet, a transformer-based toolkit for nanopore sequencing signal decoding, showing improved accuracy through autoregressive and non-autoregressive decoding mechanisms.