Author

Paolo M. Fortina

Thomas Jefferson UniversityORCID 0000-0002-5898-2081Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ATAC-seq· 1 Research Focus:batch correction / integration· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Adam ErteliD· 2 shared Gaurav KumariD· 2 shared Adam LuginbuhliD· 1 shared Alban J. LinnenbachiD· 1 shared Andrew P. SouthiD· 1 shared Apexa ModiiD· 1 shared George J. FeldmaniD· 1 shared Gregory I. Sacks· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersGenomics

Adam ErtelORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 30, 2021

Multimodal genomic markers predict immunotherapy response in the head and neck squamous cell carcinoma

Gaurav Kumar, Andrew P. South, Joseph Curry…·Adam Luginbuhl

The paper evaluates existing ICB biomarkers and identifies a novel signature to predict immunotherapy response in HNSCC using TCGA and clinical trial data.

2 citations

humanwhole-exome sequencing

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BioinformaticsScientific DataPeer-reviewedApr 14, 2020

Epigenomic profiling of neuroblastoma cell lines

Kristen A. Upton, Apexa Modi, Khushbu Patel…·Jo Lynne Rokita

The paper provides ChIP-Seq and ATAC-Seq data for MYCN, MYC, and histone marks in neuroblastoma cell lines to study gene regulation and enhancer dynamics.

78 citations

humanChIP-seq

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BioinformaticsBMC BioinformaticsPeer-reviewedFeb 13, 2020

iSeqQC: A Tool for Expression-Based Quality Control in RNA Sequencing

Gaurav Kumar, Adam Ertel, George J. Feldman…·Paolo M. Fortina

iSeqQC is an expression-based quality control tool that detects outliers caused by batch effects or phenotypic dissimilarity using statistical methods.

27 citations

bulk RNA-seqstatistical model

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