Author

Shalini Aggarwal

Boston CollegeORCID 0000-0002-5951-2102Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:multiome· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Argenis ArriojasiD· 1 shared Chana Rosenblum· 1 shared Doron LancetiD· 1 shared Eranthie WeerapanaiD· 1 shared Gretchen DiffendalliD· 1 shared Jiahong LiiD· 1 shared Jingjing LouiD· 1 shared Kourosh ZarringhalamiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperMicrobiology

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2 papers

Recent·Most cited

A MultiOmics time-resolved systems map of gene regulation in Toxoplasma gondii

Yihan Wu, Argenis Arriojas, Nachiket Shankar, Shalini Aggarwal, Jingjing Lou, Prarthana Prathap, Shreya Dua, Gretchen Diffendall, Jiahong Li, Pamodya Pamunuwa, Prince Oppong, Omar Graia, Lee S. Izhaki-Tavor, Eranthie Weerapana, Mélissa Léger-Abraham, , Marc‐Jan Gubbels

This study creates a time-resolved multi-omics map of gene regulation in Toxoplasma gondii by integrating perturbation data with single-cell measurements, revealing regulatory networks and novel interactions.

bioRxiv · Oct 30, 2026 · PreprintMicrobiology

Expanding and enriching the LncRNA gene-disease landscape using the GeneCaRNA database

Shalini Aggarwal, Chana Rosenblum, Marshall Gould, Shahar Ziman, Ruth Barshir, Ofer Zelig, Yaron Guan‐Golan, Tsippi Iny Stein, Marilyn Safran, Shmuel Pietrokovski, Doron Lancet

The paper expands the LncRNA gene-disease landscape by introducing the GeneCaRNA database, which includes 280,000 non-coding RNA genes and links 1,547 LncRNAs to diseases.

Biomedicines · Jun 12, 2024Peer-reviewedBioinformatics