Author

Yucheng Tang

National Taiwan UniversityORCID 0000-0002-6008-9700Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Daguang XuiD· 2 shared Chongyu QuiD· 1 shared Christopher Z. Eddy· 1 shared Chun‐Liang PaniD· 1 shared Deidre BeaversiD· 1 shared Emek DemiriD· 1 shared GEORGE V. THOMASiD· 1 shared Guanming WuiD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Daguang XuORCID

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Author profile →

3 papers

Recent·Most cited

Computer Vision Methods for Spatial Transcriptomics: A Survey

Junchao Zhu, Ruining Deng, Junlin Guo, Tianyuan Yao, Siqi Lu, Chongyu Qu, Juming Xiong, Yanfei Zhu, Zhengyi Lu, Yuechen Yang, Marilyn Lionts, Yucheng Tang, Daguang Xu, Yu Wang, Shilin Zhao, , Yuankai Huo

This paper surveys computer vision methods for spatial transcriptomics, categorizing models and discussing challenges and future directions.

bioRxiv · Oct 13, 2025 · PreprintBioinformatics

MiroSCOPE: An AI-driven digital pathology platform for annotating functional tissue units

Madeleine R. Fenner, Selim Sevim, Guanming Wu, Deidre Beavers, Pengfei Guo, Yucheng Tang, Christopher Z. Eddy, Kaoutar Ait-Ahmad, Travis L Rice-Stitt, GEORGE V. THOMAS, Marigold Kuykendall, Vasilis Stavrinides, Mark Emberton, Daguang Xu, Xubo B. Song, , Emek Demir

MiroSCOPE is an AI platform for annotating functional tissue units in digital pathology, enabling efficient annotation of over 71,900 units across prostate cancer samples.

bioRxiv · Jul 11, 2025 · PreprintBioinformatics

Transcriptome and Mutant Analysis of Neuronal Genes for Memory Formation and Retrieval in Caenorhabditis elegans

Yen‐Ju Chen, Shyang-Jen Wu, Yucheng Tang, Yu‐Chun Wu, Yueh‐Chen Chiang, Chun‐Liang Pan

The paper identifies stage-specific gene expression patterns for memory formation and retrieval in C. elegans and characterizes the role of CASY-1 isoforms in these processes.

bioRxiv · Oct 31, 2023 · PreprintNeuroscience