Deidre Beavers

Application of Large Language Models for Annotating Genes into Reactome Pathways

This paper applies large language models to assist in gene annotation into Reactome pathways, showing promising results in supporting curation workflows.

MiroSCOPE: An AI-driven digital pathology platform for annotating functional tissue units

MiroSCOPE is an AI platform for annotating functional tissue units in digital pathology, enabling efficient annotation of over 71,900 units across prostate cancer samples.

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

The paper annotates disease variants in the context of biological pathways to infer molecular phenotypes and model variant impacts.

Illuminating Dark Proteins using Reactome Pathways

The paper predicts functional interactions of dark proteins with Reactome pathways using a random forest classifier and develops a web portal to visualize these interactions.