Author

Duncan C. Thomas

University of Southern CaliforniaORCID 0000-0002-6040-8804Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Assay:GWAS summary statistics· 1 Organism:human· 1

Frequent Co-Authors

Anne S. ReineriD· 1 shared Charles F. LynchiD· 1 shared Chubing ZengiD· 1 shared George G. Vega YoniD· 1 shared Huaiyu MiiD· 1 shared John D. BoiceiD· 1 shared John L. MorrisoniD· 1 shared Jonine L. BernsteiniD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperBioinformatics

Anne S. ReinerORCID

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3 papers

Recent·Most cited

On the automatic annotation of gene functions using observational data and phylogenetic trees

George G. Vega Yon, Duncan C. Thomas, John L. Morrison, Huaiyu Mi, Paul D. Thomas, Paul Marjoram

This paper develops a probabilistic model using phylogenetic trees and Gene Ontology annotations to predict gene functions, showing scalability and agreement with biological intuition.

PLoS Computational Biology · Feb 18, 2021Peer-reviewedBioinformatics

Incorporating Prior Knowledge into Regularized Regression

Chubing Zeng, Duncan C. Thomas, Juan Pablo Lewinger

The paper introduces a penalized regression method that integrates external meta-features a-priori to improve prediction and interpretation in genomic studies.

Bioinformatics · Sep 1, 2020Peer-reviewedBioinformatics

Machine Learning Methods to Identify Genetic Correlates of Radiation-Associated Contralateral Breast Cancer in the WECARE Study

Sangkyu Lee, Xiaolin Liang, Meghan Woods, Anne S. Reiner, Duncan C. Thomas, PATRICK J. CONCANNON, Leslie Bernstein, Charles F. Lynch, John D. Boice, Joseph O. Deasy, Jonine L. Bernstein, Jung Hun Oh

bioRxiv · Feb 12, 2019 · PreprintBioinformatics