Author

Andrew J Dunford

Broad InstituteORCID 0000-0002-6152-3169Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 4 Assay:whole-genome sequencing· 4 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Research Focus:variant effect prediction· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Ana Dueso-BarrosoiD· 4 shared Benedikt BrorsiD· 4 shared David D.L. BowtelliD· 4 shared Hidewaki NakagawaiD· 4 shared Isidro Cortés‐CirianoiD· 4 shared Jan O. KorbeliD· 4 shared Kathleen H. BurnsiD· 4 shared Kin ChaniD· 4 shared

Activity by Year

2020-2020 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenomics

Ana Dueso-BarrosoORCID

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4 papers

Recent·Most cited

GenomicsNature CommunicationsPeer-reviewedFeb 5, 2020

Genomic footprints of activated telomere maintenance mechanisms in cancer

Lina Sieverling, Chen Hong, Sandra D. Koser…·Rehan Akbani

The paper analyzes whole-genome sequencing data from cancer samples to identify genomic footprints of telomere maintenance mechanisms, finding specific telomere variant repeat patterns associated with ATRX/DAXX mutations.

133 citationstop 1%

humanwhole-genome sequencing

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GenomicsNature GeneticsPeer-reviewedFeb 5, 2020

Spatial Genome Organization as a Framework for Somatic Alterations in Human Cancer

Kadir Caner Akdemir, Victoria T. Le, Sahaana Chandran…·Ludmil B. Alexandrov

The paper examines how somatic structural variations affect TAD boundaries and gene regulation in human cancers using whole genome sequencing data.

283 citationstop 1%

humanwhole-genome sequencing

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GenomicsNature GeneticsPeer-reviewedFeb 5, 2020

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Isidro Cortés-Ciriano, Jake June-Koo Lee, Ruibin Xi…·Kenneth Aldape

This study analyzes chromothripsis in 2,658 cancers using whole-genome sequencing, finding it prevalent across multiple cancer types with complex structural alterations.

712 citationstop 1%

humanwhole-genome sequencing

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GenomicsNature CommunicationsPeer-reviewedFeb 5, 2020

Whole genome and RNA sequencing of 1,220 cancers reveals hundreds of genes deregulated by rearrangement of cis-regulatory elements

Yiqun Zhang, Fengju Chen, Nuno A. Fonseca…·Paul Alan Edwards

The paper identifies hundreds of genes deregulated by SVs in cancer, showing increased expression linked to SV breakpoints and enhancer elements.

77 citationstop 2%

humanwhole-genome sequencing

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