Charles W. Christoffer

DistPepFold improves protein-peptide complex docking using a privileged knowledge distillation approach based on AlphaFold-Multimer, outperforming AFM on two datasets.

The paper introduces Mem-LZerD, a membrane protein docking algorithm that improves the modeling of membrane protein complexes using geometric hashing and membrane constraints, achieving higher success rates than previous methods.

The paper introduces 3D-AF-Surfer, a tool for real-time structure-based search of AlphaFold2 protein models using molecular surface representation and 3D Zernike descriptors.

AttentiveDist improves protein inter-residue distance prediction using deep learning with attention on multiple sequence alignments, achieving better performance than existing methods in CASP13.