Véronique Brunaud

Comparative cross-species transcriptomic analysis identifies new candidates of Pooideae nitrate response

This study compares transcriptomic responses to nitrate in Arabidopsis, Brachypodium, and barley to identify conserved and species-specific mechanisms, providing a pipeline for cross-species transcriptomic analysis.

How to be dispensable: genomic and transcriptomic determinants in maize genes

The paper identifies genomic and transcriptomic factors determining gene dispensability in maize by analyzing a pan-gene set and transcriptomic profiles across multiple tissues.

Plant-PLMview: a database for identifying cis-regulatory sequences with preferential positions in gene-proximal regions of plants

Plant-PLMview identifies cis-regulatory sequences in gene-proximal regions of 20 plant species using curated data and a web tool for motif analysis.

A comprehensive map of preferentially located motifs reveals distinct proximal cis-regulatory elements in plants

The paper identifies conserved preferentially located motifs (PLMs) in Arabidopsis and maize, revealing unassigned PLMs that provide distinct functional predictions.

To what extent gene connectivity within co-expression network matters for phenotype prediction?

The paper assesses whether gene connectivity in co-expression networks improves phenotype prediction, finding that core genes, though more differentiated, do not systematically predict traits better than peripheral genes.